1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:2.28e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU61_RS03565
Response regulator OmpR family
Clostridioides difficile · GCF_002303415
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303415#BGU61_RS03565Stable P2CS identifier used across views.
GenomeGCF_002303415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:149:2e-19:223:76:77- Raw architecture: Response_reg:3:2.28e-28:115:113:111#Trans_reg_C:149:2e-19:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303415::NZ_MOTD01000008.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5883-7855Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU61_03500RefSeq proteinWP_074034311.1
Context group ID
GCF_002303415::NZ_MOTD01000008.1::G00005Context members
BGU61_RS03560BGU61_RS03565
Partner locus tags
BGU61_RS03560BGU61_RS03565
Partner old locus tags
BGU61_03495BGU61_03500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074034311.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU61_RS03565Primary locus identifier stored in the genes table.
Old locus tagBGU61_03500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOTD01000008.1Sequence record reported by the local genomic context database.
Genomic interval7 169-7 855 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 883-7 855 ntGCF_002303415::NZ_MOTD01000008.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303415::NZ_MOTD01000008.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOTD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span5 883-7 855 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 883 nt7 855 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU61_RS03560GCF_002303415#BGU61_RS03560
HKClassic
5 883-7 175 nt · Reverse (-)
BGU61_RS03565GCF_002303415#BGU61_RS03565
RROmpRCurrent focus
7 169-7 855 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002300835#BGT93_RS02620Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1312071
Simplified PFAM architecture for RROC_1312071
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1312071
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_002300835#BGT93_RS02620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303415
AssemblyASM230341v1 · Contighaploid
Genome composition4 379 705 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key