1 HisKA#1
449-514 aa · 66 aa · 10.3% of protein
Raw token
HisKA:449:0.00000000294:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU52_RS02690
Histidine kinase, Classic
Clostridioides difficile · GCF_002303225
ClassHKTypeClassicLength642 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303225#BGU52_RS02690Stable P2CS identifier used across views.
GenomeGCF_002303225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length642 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage137 / 642 aa (21.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
565-635 aa · 71 aa · 11.1% of protein
Raw token
HATPase_c:565:4.39e-16:635:71:109- Raw architecture: HisKA:449:0.00000000294:514:66:64#HATPase_c:565:4.39e-16:635:71:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303225::NZ_MPJN01000026.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2675Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU52_02655RefSeq proteinWP_176481753.1
Context group ID
GCF_002303225::NZ_MPJN01000026.1::G00006Context members
BGU52_RS02690BGU52_RS02695
Partner locus tags
BGU52_RS02690BGU52_RS02695
Partner old locus tags
BGU52_02655BGU52_02660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_176481753.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU52_RS02690Primary locus identifier stored in the genes table.
Old locus tagBGU52_02655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPJN01000026.1Sequence record reported by the local genomic context database.
Genomic interval1-1 926 nt1 926 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-2 675 ntGCF_002303225::NZ_MPJN01000026.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303225::NZ_MPJN01000026.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPJN01000026.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 675 nt2 675 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 675 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU52_RS02690GCF_002303225#BGU52_RS02690
HKClassicCurrent focus
1-1 926 nt · Reverse (-)
BGU52_RS02695GCF_002303225#BGU52_RS02695
RROmpR
1 998-2 675 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303225#BGU52_RS02690The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0916089
Simplified PFAM architecture for HKOC_0916089
PFAM domain coverage: 138 / 642 aa (21.5%)
1 aa642 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-635]
- Domain count: 2
- Matched identifier: HKOC_0916089
- Positioned domains: HisKA 450-514 ; HATPase_c 563-635
Cluster members and taxonomy
Representative gene: GCF_002303225#BGU52_RS02690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303225
AssemblyASM230322v1 · Contighaploid
Genome composition4 020 058 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 43 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key