1 Response_reg#1
3-115 aa · 113 aa · 44.1% of protein
Raw token
Response_reg:3:0.00000188:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV17_RS18595
Response regulator LytTR family
Clostridioides difficile · GCF_002303025
ClassRRTypeLytTRLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002303025#BGV17_RS18595Stable P2CS identifier used across views.
GenomeGCF_002303025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 256 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-246 aa · 93 aa · 36.3% of protein
Raw token
LytTR:154:0.00000000000000248:246:98:98- Raw architecture: Response_reg:3:0.00000188:115:113:111#LytTR:154:0.00000000000000248:246:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002303025::NZ_MPFP01000398.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span78-848Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV17_18335RefSeq proteinWP_095926060.1
Context group ID
GCF_002303025::NZ_MPFP01000398.1::G00055Context members
BGV17_RS18595
Partner locus tags
BGV17_RS18595
Partner old locus tags
BGV17_18335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095926060.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV17_RS18595Primary locus identifier stored in the genes table.
Old locus tagBGV17_18335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFP01000398.1Sequence record reported by the local genomic context database.
Genomic interval78-848 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78-848 ntGCF_002303025::NZ_MPFP01000398.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303025::NZ_MPFP01000398.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFP01000398.1All displayed genes belong to this local TCS context.
Neighborhood span78-848 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 nt848 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV17_RS18595GCF_002303025#BGV17_RS18595
RRLytTRCurrent focus
78-848 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303025#BGV17_RS18595The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0674334
Simplified PFAM architecture for RROC_0674334
PFAM domain coverage: 91 / 256 aa (35.5%)
1 aa256 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[155-245]
- Domain count: 1
- Matched identifier: RROC_0674334
- Positioned domains: LytTR 155-245 ; LytTR 155-245
Cluster members and taxonomy
Representative gene: GCF_002303025#BGV17_RS18595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303025
AssemblyASM230302v1 · Contighaploid
Genome composition4 060 983 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key