1 GAF_3#1
193-284 aa · 92 aa · 17.2% of protein
Raw token
GAF_3:193:0.0000191:284:108:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV17_RS10135
Histidine kinase, Classic
Clostridioides difficile · GCF_002303025
ClassHKTypeClassicLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002303025#BGV17_RS10135Stable P2CS identifier used across views.
GenomeGCF_002303025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage270 / 535 aa (50.5%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HisKA#2
304-371 aa · 68 aa · 12.7% of protein
Raw token
HisKA:304:0.00000000000013:371:68:643 HATPase_c#3
416-525 aa · 110 aa · 20.6% of protein
Raw token
HATPase_c:416:2.77e-31:525:110:109- Raw architecture: GAF_3:193:0.0000191:284:108:129#HisKA:304:0.00000000000013:371:68:64#HATPase_c:416:2.77e-31:525:110:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002303025::NZ_MPFP01000094.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span798-3100Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV17_10000RefSeq proteinWP_095925971.1
Context group ID
GCF_002303025::NZ_MPFP01000094.1::G00030Context members
BGV17_RS10130BGV17_RS10135
Partner locus tags
BGV17_RS10130BGV17_RS10135
Partner old locus tags
BGV17_09995BGV17_10000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095925971.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV17_RS10135Primary locus identifier stored in the genes table.
Old locus tagBGV17_10000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFP01000094.1Sequence record reported by the local genomic context database.
Genomic interval1 493-3 100 nt1 608 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span798-3 100 ntGCF_002303025::NZ_MPFP01000094.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002303025::NZ_MPFP01000094.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFP01000094.1All displayed genes belong to this local TCS context.
Neighborhood span798-3 100 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
798 nt3 100 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV17_RS10130GCF_002303025#BGV17_RS10130
RROmpR
798-1 502 nt · Reverse (-)
BGV17_RS10135GCF_002303025#BGV17_RS10135
HKClassicCurrent focus
1 493-3 100 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303025#BGV17_RS10135The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1339067
Simplified PFAM architecture for HKOC_1339067
PFAM domain coverage: 286 / 535 aa (53.5%)
1 aa535 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[32-139] | HisKA[304-371] | HATPase_c[416-525]
- Domain count: 3
- Matched identifier: HKOC_1339067
- Positioned domains: DUF4118 32-139 ; HisKA 304-371 ; HATPase_c 416-525
Cluster members and taxonomy
Representative gene: GCF_002303025#BGV17_RS10135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002303025
AssemblyASM230302v1 · Contighaploid
Genome composition4 060 983 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key