1 HisKA#1
85-151 aa · 67 aa · 22.0% of protein
Raw token
HisKA:85:4.35e-18:151:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV14_RS18405
Histidine kinase, Classic
Clostridioides difficile · GCF_002302985
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302985#BGV14_RS18405Stable P2CS identifier used across views.
GenomeGCF_002302985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 305 aa (56.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
198-302 aa · 105 aa · 34.4% of protein
Raw token
HATPase_c:198:0.000000000319:302:110:109- Raw architecture: HisKA:85:4.35e-18:151:67:64#HATPase_c:198:0.000000000319:302:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302985::NZ_MPGG01000909.1::G00061
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span67-986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV14_18100RefSeq proteinWP_141248330.1
Context group ID
GCF_002302985::NZ_MPGG01000909.1::G00061Context members
BGV14_RS18405
Partner locus tags
BGV14_RS18405
Partner old locus tags
BGV14_18100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141248330.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV14_RS18405Primary locus identifier stored in the genes table.
Old locus tagBGV14_18100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGG01000909.1Sequence record reported by the local genomic context database.
Genomic interval67-986 nt920 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67-986 ntGCF_002302985::NZ_MPGG01000909.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302985::NZ_MPGG01000909.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGG01000909.1All displayed genes belong to this local TCS context.
Neighborhood span67-986 nt920 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 nt986 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV14_RS18405GCF_002302985#BGV14_RS18405
HKClassicCurrent focus
67-986 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0212970Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0598797
Simplified PFAM architecture for HKOC_0598797
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0598797
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0212970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302985
AssemblyASM230298v1 · Contighaploid
Genome composition3 967 225 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 46 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key