1 Response_reg#1
8-122 aa · 115 aa · 55.3% of protein
Raw token
Response_reg:8:3.65e-18:122:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV14_RS00890
Response regulator NarL family
Clostridioides difficile · GCF_002302985
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302985#BGV14_RS00890Stable P2CS identifier used across views.
GenomeGCF_002302985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 208 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
142-198 aa · 57 aa · 27.4% of protein
Raw token
HTH_LUXR:142:8.59e-19:198:57:58- Raw architecture: Response_reg:8:3.65e-18:122:116:111#HTH_LUXR:142:8.59e-19:198:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302985::NZ_MPGG01000006.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6991-7617Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV14_00855RefSeq proteinWP_095892155.1
Context group ID
GCF_002302985::NZ_MPGG01000006.1::G00005Context members
BGV14_RS00890
Partner locus tags
BGV14_RS00890
Partner old locus tags
BGV14_00855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095892155.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV14_RS00890Primary locus identifier stored in the genes table.
Old locus tagBGV14_00855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGG01000006.1Sequence record reported by the local genomic context database.
Genomic interval6 991-7 617 nt627 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 991-7 617 ntGCF_002302985::NZ_MPGG01000006.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302985::NZ_MPGG01000006.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span6 991-7 617 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 991 nt7 617 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV14_RS00890GCF_002302985#BGV14_RS00890
RRNarLCurrent focus
6 991-7 617 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302985#BGV14_RS00890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2059724
Simplified PFAM architecture for RROC_2059724
PFAM domain coverage: 171 / 208 aa (82.2%)
1 aa208 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[8-122] | GerE[143-198]
- Domain count: 2
- Matched identifier: RROC_2059724
- Positioned domains: Response_reg 8-122 ; Response_reg 8-122 ; GerE 143-198 ; GerE 143-198
Cluster members and taxonomy
Representative gene: GCF_002302985#BGV14_RS00890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302985
AssemblyASM230298v1 · Contighaploid
Genome composition3 967 225 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 46 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key