1 His_kinase#1
191-269 aa · 79 aa · 20.5% of protein
Raw token
His_kinase:191:2.4e-31:269:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV14_RS12900
Histidine kinase, Classic
Clostridioides difficile · GCF_002302985
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302985#BGV14_RS12900Stable P2CS identifier used across views.
GenomeGCF_002302985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 386 aa (46.6%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
286-386 aa · 101 aa · 26.2% of protein
Raw token
HATPase_c:286:0.0000000012:386:108:109- Raw architecture: His_kinase:191:2.4e-31:269:80:80#HATPase_c:286:0.0000000012:386:108:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302985::NZ_MPGG01000387.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1622-3557Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV14_12700RefSeq proteinWP_095892314.1
Context group ID
GCF_002302985::NZ_MPGG01000387.1::G00038Context members
BGV14_RS12895BGV14_RS12900
Partner locus tags
BGV14_RS12895BGV14_RS12900
Partner old locus tags
BGV14_12695BGV14_12700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095892314.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV14_RS12900Primary locus identifier stored in the genes table.
Old locus tagBGV14_12700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPGG01000387.1Sequence record reported by the local genomic context database.
Genomic interval2 397-3 557 nt1 161 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 622-3 557 ntGCF_002302985::NZ_MPGG01000387.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302985::NZ_MPGG01000387.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGG01000387.1All displayed genes belong to this local TCS context.
Neighborhood span1 622-3 557 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 622 nt3 557 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGV14_RS12895GCF_002302985#BGV14_RS12895
RRLytTR
1 622-2 392 nt · Reverse (-)
BGV14_RS12900GCF_002302985#BGV14_RS12900
HKClassicCurrent focus
2 397-3 557 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302985#BGV14_RS12900The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2558721
Simplified PFAM architecture for HKOC_2558721
PFAM domain coverage: 342 / 386 aa (88.6%)
1 aa386 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[13-176] | His_kinase[191-267] | HATPase_c[285-385]
- Domain count: 3
- Matched identifier: HKOC_2558721
- Positioned domains: 5TM-5TMR_LYT 13-176 ; His_kinase 191-267 ; HATPase_c 285-385
Cluster members and taxonomy
Representative gene: GCF_002302985#BGV14_RS12900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302985
AssemblyASM230298v1 · Contighaploid
Genome composition3 967 225 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 46 · RR 54CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key