1 Response_reg#1
45-116 aa · 72 aa · 23.7% of protein
Raw token
Response_reg:45:0.00000114:116:76:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGV00_RS05790
Response regulator, unclassified
Clostridioides difficile · GCF_002302755
ClassRRTypeunclassifiedLength304 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302755#BGV00_RS05790Stable P2CS identifier used across views.
GenomeGCF_002302755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length304 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage72 / 304 aa (23.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa304 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:45:0.00000114:116:76:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302755::NZ_MPEL01000007.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span47770-48684Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGV00_05770RefSeq proteinWP_095903705.1
Context group ID
GCF_002302755::NZ_MPEL01000007.1::G00018Context members
BGV00_RS05790
Partner locus tags
BGV00_RS05790
Partner old locus tags
BGV00_05770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095903705.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGV00_RS05790Primary locus identifier stored in the genes table.
Old locus tagBGV00_05770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPEL01000007.1Sequence record reported by the local genomic context database.
Genomic interval47 770-48 684 nt915 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 770-48 684 ntGCF_002302755::NZ_MPEL01000007.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302755::NZ_MPEL01000007.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPEL01000007.1All displayed genes belong to this local TCS context.
Neighborhood span47 770-48 684 nt915 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 770 nt48 684 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGV00_RS05790GCF_002302755#BGV00_RS05790
RRunclassifiedCurrent focus
47 770-48 684 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302755#BGV00_RS05790The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_0565382
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_002302755#BGV00_RS05790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302755
AssemblyASM230275v1 · Contighaploid
Genome composition4 418 761 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key