1 HisKA#1
3-65 aa · 63 aa · 28.5% of protein
Raw token
HisKA:3:0.0000000000000242:65:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU90_RS20905
Histidine kinase, Classic
Clostridioides difficile · GCF_002302585
ClassHKTypeClassicLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002302585#BGU90_RS20905Stable P2CS identifier used across views.
GenomeGCF_002302585Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 221 aa (74.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
114-215 aa · 102 aa · 46.2% of protein
Raw token
HATPase_c:114:6.16e-24:215:103:109- Raw architecture: HisKA:3:0.0000000000000242:65:63:64#HATPase_c:114:6.16e-24:215:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002302585::NZ_MPGB01000049.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4312-6299Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002302585::NZ_MPGB01000049.1::G00038Context members
BGU90_RS11680BGU90_RS20905
Partner locus tags
BGU90_RS11680BGU90_RS20905
Partner old locus tags
BGU90_11600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236875469.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU90_RS20905Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_MPGB01000049.1Sequence record reported by the local genomic context database.
Genomic interval5 634-6 299 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 312-6 299 ntGCF_002302585::NZ_MPGB01000049.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302585::NZ_MPGB01000049.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPGB01000049.1All displayed genes belong to this local TCS context.
Neighborhood span4 312-6 299 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 312 nt6 299 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU90_RS11680GCF_002302585#BGU90_RS11680
RRNtrC
4 312-5 634 nt · Reverse (-)
BGU90_RS20905GCF_002302585#BGU90_RS20905
HKClassicCurrent focus
5 634-6 299 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021284575#LWE98_RS15750Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0843923
Simplified PFAM architecture for HKOC_0843923
PFAM domain coverage: 385 / 671 aa (57.4%)
1 aa671 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[67-284] | HisKA[455-516] | HATPase_c[562-666]
- Domain count: 3
- Matched identifier: HKOC_0843923
- Positioned domains: SBP_bac_3 67-284 ; HisKA 455-516 ; HATPase_c 562-666
Cluster members and taxonomy
Representative gene: GCF_021284575#LWE98_RS15750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302585
AssemblyASM230258v1 · Contighaploid
Genome composition4 183 291 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key