1 HisKA#1
59-119 aa · 61 aa · 22.2% of protein
Raw token
HisKA:59:0.0000111:119:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU76_RS12695
Histidine kinase, Classic
Clostridioides difficile · GCF_002302265
ClassHKTypeClassicLength275 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302265#BGU76_RS12695Stable P2CS identifier used across views.
GenomeGCF_002302265Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length275 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 275 aa (61.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa275 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
165-272 aa · 108 aa · 39.3% of protein
Raw token
HATPase_c:165:6.06e-26:272:108:109- Raw architecture: HisKA:59:0.0000111:119:63:64#HATPase_c:165:6.06e-26:272:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302265::NZ_MPFZ01000354.1::G00035
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU76_12515RefSeq proteinWP_142990784.1
Context group ID
GCF_002302265::NZ_MPFZ01000354.1::G00035Context members
BGU76_RS12695
Partner locus tags
BGU76_RS12695
Partner old locus tags
BGU76_12515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142990784.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU76_RS12695Primary locus identifier stored in the genes table.
Old locus tagBGU76_12515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFZ01000354.1Sequence record reported by the local genomic context database.
Genomic interval1-830 nt830 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-830 ntGCF_002302265::NZ_MPFZ01000354.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302265::NZ_MPFZ01000354.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFZ01000354.1All displayed genes belong to this local TCS context.
Neighborhood span1-830 nt830 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt830 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU76_RS12695GCF_002302265#BGU76_RS12695
HKClassicCurrent focus
1-830 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302265#BGU76_RS12695The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2904607
Simplified PFAM architecture for HKOC_2904607
PFAM domain coverage: 108 / 275 aa (39.3%)
1 aa275 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[165-272]
- Domain count: 1
- Matched identifier: HKOC_2904607
- Positioned domains: HATPase_c 165-272
Cluster members and taxonomy
Representative gene: GCF_002302265#BGU76_RS12695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302265
AssemblyASM230226v1 · Contighaploid
Genome composition4 008 507 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key