1 Response_reg#1
8-62 aa · 55 aa · 31.1% of protein
Raw token
Response_reg:8:0.00000000000000452:62:56:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU76_RS00370
Response regulator OmpR family
Clostridioides difficile · GCF_002302265
ClassRRTypeOmpRLength177 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302265#BGU76_RS00370Stable P2CS identifier used across views.
GenomeGCF_002302265Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length177 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage131 / 177 aa (74.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa177 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
95-170 aa · 76 aa · 42.9% of protein
Raw token
Trans_reg_C:95:3.63e-24:170:78:77- Raw architecture: Response_reg:8:0.00000000000000452:62:56:111#Trans_reg_C:95:3.63e-24:170:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302265::NZ_MPFZ01000069.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-535Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU76_00345RefSeq proteinWP_142990768.1
Context group ID
GCF_002302265::NZ_MPFZ01000069.1::G00001Context members
BGU76_RS00370
Partner locus tags
BGU76_RS00370
Partner old locus tags
BGU76_00345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142990768.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU76_RS00370Primary locus identifier stored in the genes table.
Old locus tagBGU76_00345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFZ01000069.1Sequence record reported by the local genomic context database.
Genomic interval1-535 nt535 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-535 ntGCF_002302265::NZ_MPFZ01000069.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302265::NZ_MPFZ01000069.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFZ01000069.1All displayed genes belong to this local TCS context.
Neighborhood span1-535 nt535 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt535 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU76_RS00370GCF_002302265#BGU76_RS00370
RROmpRCurrent focus
1-535 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302265#BGU76_RS00370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2190649
Simplified PFAM architecture for RROC_2190649
PFAM domain coverage: 129 / 177 aa (72.9%)
1 aa177 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-61] | Trans_reg_C[95-169]
- Domain count: 2
- Matched identifier: RROC_2190649
- Positioned domains: Response_reg 8-61 ; Response_reg 8-61 ; Trans_reg_C 95-169 ; Trans_reg_C 95-169
Cluster members and taxonomy
Representative gene: GCF_002302265#BGU76_RS00370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302265
AssemblyASM230226v1 · Contighaploid
Genome composition4 008 507 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key