1 Response_reg#1
16-128 aa · 113 aa · 45.7% of protein
Raw token
Response_reg:16:0.0000000000000866:128:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU89_RS17295
Response regulator LytTR family
Clostridioides difficile · GCF_002302125
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302125#BGU89_RS17295Stable P2CS identifier used across views.
GenomeGCF_002302125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 247 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
148-228 aa · 81 aa · 32.8% of protein
Raw token
LytTR:148:8.52e-18:228:87:98- Raw architecture: Response_reg:16:0.0000000000000866:128:117:111#LytTR:148:8.52e-18:228:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302125::NZ_MPEW01000450.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span189-933Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU89_17065RefSeq proteinWP_236875349.1
Context group ID
GCF_002302125::NZ_MPEW01000450.1::G00053Context members
BGU89_RS17295
Partner locus tags
BGU89_RS17295
Partner old locus tags
BGU89_17065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236875349.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU89_RS17295Primary locus identifier stored in the genes table.
Old locus tagBGU89_17065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPEW01000450.1Sequence record reported by the local genomic context database.
Genomic interval189-933 nt745 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span189-933 ntGCF_002302125::NZ_MPEW01000450.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302125::NZ_MPEW01000450.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPEW01000450.1All displayed genes belong to this local TCS context.
Neighborhood span189-933 nt745 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
189 nt933 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU89_RS17295GCF_002302125#BGU89_RS17295
RRLytTRCurrent focus
189-933 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302125#BGU89_RS17295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0758747
Simplified PFAM architecture for RROC_0758747
PFAM domain coverage: 197 / 247 aa (79.8%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[16-127] | LytTR[150-234]
- Domain count: 2
- Matched identifier: RROC_0758747
- Positioned domains: Response_reg 16-127 ; Response_reg 16-127 ; LytTR 150-234 ; LytTR 150-234
Cluster members and taxonomy
Representative gene: GCF_002302125#BGU89_RS17295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302125
AssemblyASM230212v1 · Contighaploid
Genome composition4 196 520 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key