1 PAS_8#1
373-410 aa · 38 aa · 5.0% of protein
Raw token
PAS_8:373:0.000047:410:38:65P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU89_RS01395
Histidine kinase, Classic
Clostridioides difficile · GCF_002302125
ClassHKTypeClassicLength753 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002302125#BGU89_RS01395Stable P2CS identifier used across views.
GenomeGCF_002302125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_8HisKAHATPase_c
Protein length753 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage219 / 753 aa (29.1%)Merged over positioned domains only.
Domain description1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
496-564 aa · 69 aa · 9.2% of protein
Raw token
HisKA:496:0.0000000019:564:69:643 HATPase_c#3
615-726 aa · 112 aa · 14.9% of protein
Raw token
HATPase_c:615:6.85e-26:726:112:109- Raw architecture: PAS_8:373:0.000047:410:38:65#HisKA:496:0.0000000019:564:69:64#HATPase_c:615:6.85e-26:726:112:109
- Domain description: 1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002302125::NZ_MPEW01000127.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-2262Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU89_01375RefSeq proteinWP_095918010.1
Context group ID
GCF_002302125::NZ_MPEW01000127.1::G00005Context members
BGU89_RS01395
Partner locus tags
BGU89_RS01395
Partner old locus tags
BGU89_01375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095918010.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU89_RS01395Primary locus identifier stored in the genes table.
Old locus tagBGU89_01375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPEW01000127.1Sequence record reported by the local genomic context database.
Genomic interval1-2 262 nt2 262 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 262 ntGCF_002302125::NZ_MPEW01000127.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002302125::NZ_MPEW01000127.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPEW01000127.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 262 nt2 262 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 262 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU89_RS01395GCF_002302125#BGU89_RS01395
HKClassicCurrent focus
1-2 262 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302125#BGU89_RS01395The current gene is the representative for this cluster.
PFAM architecturePAS_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0661690
Simplified PFAM architecture for HKOC_0661690
PFAM domain coverage: 220 / 753 aa (29.2%)
1 aa753 aa
PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[373-413] | HisKA[497-564] | HATPase_c[615-725]
- Domain count: 3
- Matched identifier: HKOC_0661690
- Positioned domains: PAS_8 373-413 ; HisKA 497-564 ; HATPase_c 615-725
Cluster members and taxonomy
Representative gene: GCF_002302125#BGU89_RS01395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002302125
AssemblyASM230212v1 · Contighaploid
Genome composition4 196 520 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key