1 Response_reg#1
6-112 aa · 107 aa · 45.3% of protein
Raw token
Response_reg:6:3.4e-18:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU48_RS01230
Response regulator LytTR family
Clostridioides difficile · GCF_002301855
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002301855#BGU48_RS01230Stable P2CS identifier used across views.
GenomeGCF_002301855Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 236 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:1.35e-18:227:93:98- Raw architecture: Response_reg:6:3.4e-18:112:110:111#LytTR:141:1.35e-18:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002301855::NZ_MOQV01000002.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span111646-112356Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU48_01215RefSeq proteinWP_095899530.1
Context group ID
GCF_002301855::NZ_MOQV01000002.1::G00006Context members
BGU48_RS01230
Partner locus tags
BGU48_RS01230
Partner old locus tags
BGU48_01215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095899530.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU48_RS01230Primary locus identifier stored in the genes table.
Old locus tagBGU48_01215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQV01000002.1Sequence record reported by the local genomic context database.
Genomic interval111 646-112 356 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span111 646-112 356 ntGCF_002301855::NZ_MOQV01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301855::NZ_MOQV01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span111 646-112 356 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 646 nt112 356 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU48_RS01230GCF_002301855#BGU48_RS01230
RRLytTRCurrent focus
111 646-112 356 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301855#BGU48_RS01230The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0993905
Simplified PFAM architecture for RROC_0993905
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_0993905
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 141-226 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_002301855#BGU48_RS01230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301855
AssemblyASM230185v1 · Contighaploid
Genome composition4 463 134 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key