Gene detail

BGU48_RS01000

Histidine kinase, Classic

Clostridioides difficile · GCF_002301855

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_002301855#BGU48_RS01000Stable P2CS identifier used across views.

GenomeGCF_002301855Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides

Selected clusterHKOC_1889970Run 6 · 16 sequences · id 100% · cov 80%

External referencesWP_074048882.1 · MIST4 BGU48_RS01000RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length456 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage177 / 456 aa (38.8%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa456 aa

Domain-by-domain annotation2 items

1 HisKA#1

230-293 aa · 64 aa · 14.0% of protein

Raw tokenHisKA:230:0.00000000000155:293:64:64

2 HATPase_c#2

343-455 aa · 113 aa · 24.8% of protein

Raw tokenHATPase_c:343:4.6e-22:455:113:109

Raw architecture: HisKA:230:0.00000000000155:293:64:64#HATPase_c:343:4.6e-22:455:113:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_002301855::NZ_MOQV01000002.1::G00004

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span63949-66011Genomic interval covered by the local TCS group.

Identifiers

Old locus tagBGU48_00985RefSeq proteinWP_074048882.1

Context group IDGCF_002301855::NZ_MOQV01000002.1::G00004

Context members

BGU48_RS01000BGU48_RS01005

Partner locus tags

BGU48_RS01000BGU48_RS01005

Partner old locus tags

BGU48_00985BGU48_00990

Partner protein IDs

WP_074048882.1 WP_005927600.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_074048882.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBGU48_RS01000Primary locus identifier stored in the genes table.

Old locus tagBGU48_00985Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_MOQV01000002.1Sequence record reported by the local genomic context database.

Genomic interval63 949-65 319 nt1 371 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span63 949-66 011 ntGCF_002301855::NZ_MOQV01000002.1::G00004

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_002301855::NZ_MOQV01000002.1::G00004

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_MOQV01000002.1All displayed genes belong to this local TCS context.

Neighborhood span63 949-66 011 nt2 063 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

63 949 nt66 011 nt

+-BGU48_RS01000 BGU48_RS01005

Neighborhood gene cards

2 genes in the current local neighborhood.

BGU48_RS01000GCF_002301855#BGU48_RS01000

HKClassicCurrent focus

63 949-65 319 nt · Reverse (-)

Old locus BGU48_00985RefSeq WP_074048882.1

Open current gene

BGU48_RS01005GCF_002301855#BGU48_RS01005

RROmpR

65 316-66 011 nt · Reverse (-)

Old locus BGU48_00990RefSeq WP_005927600.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1889970HK

Run 616 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Representative GCF_002301405#BGU19_RS07280

Selected clusterHKOC_1889970Run 6 · HK · 16 sequences

Representative sequenceGCF_002301405#BGU19_RS07280Use this link to inspect the representative gene detail.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_1889970

Simplified PFAM architecture for HKOC_1889970

PFAM domain coverage: 176 / 456 aa (38.6%)

1 aa456 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[230-293] | HATPase_c[343-454]
Domain count: 2
Matched identifier: HKOC_1889970
Positioned domains: HisKA 230-293 ; HATPase_c 343-454

Cluster members and taxonomy

Representative gene: GCF_002301405#BGU19_RS07280

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301855

AssemblyASM230185v1 · Contighaploid

Genome composition4 463 134 bp · 29,5% GCClostridioides difficile

Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key