1 Response_reg#1
3-114 aa · 112 aa · 30.3% of protein
Raw token
Response_reg:3:9.6e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU47_RS03600
Response regulator, unclassified
Clostridioides difficile · GCF_002301835
ClassRRTypeunclassifiedLength370 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301835#BGU47_RS03600Stable P2CS identifier used across views.
GenomeGCF_002301835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5
Protein length370 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 370 aa (62.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa370 aa
Domain-by-domain annotation2 items
2 AAA_5#2
157-275 aa · 119 aa · 32.2% of protein
Raw token
AAA_5:157:0.00000000278:275:128:135- Raw architecture: Response_reg:3:9.6e-26:114:112:111#AAA_5:157:0.00000000278:275:128:135
- Domain description: 1 Response_reg,1 AAA_5
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301835::NZ_MOQW01000003.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span234000-237106Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU47_03560RefSeq proteinWP_236879555.1
Context group ID
GCF_002301835::NZ_MOQW01000003.1::G00013Context members
BGU47_RS03600BGU47_RS03605
Partner locus tags
BGU47_RS03600BGU47_RS03605
Partner old locus tags
BGU47_03560BGU47_03565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236879555.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU47_RS03600Primary locus identifier stored in the genes table.
Old locus tagBGU47_03560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQW01000003.1Sequence record reported by the local genomic context database.
Genomic interval234 000-235 112 nt1 113 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span234 000-237 106 ntGCF_002301835::NZ_MOQW01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301835::NZ_MOQW01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span234 000-237 106 nt3 107 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
234 000 nt237 106 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU47_RS03600GCF_002301835#BGU47_RS03600
RRunclassifiedCurrent focus
234 000-235 112 nt · Reverse (-)
BGU47_RS03605GCF_002301835#BGU47_RS03605
HKClassic
235 112-237 106 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301835#BGU47_RS03600The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_143 domains in the representative PFAM annotation.
PFAM architecture for RROC_0441238
Simplified PFAM architecture for RROC_0441238
PFAM domain coverage: 338 / 370 aa (91.4%)
1 aa370 aa
Response_regSigma54_activatAAA_lid_14
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14
- Raw architecture: Response_reg[3-113] | Sigma54_activat[137-300] | AAA_lid_14[306-368]
- Domain count: 3
- Matched identifier: RROC_0441238
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Sigma54_activat 137-300 ; Sigma54_activat 137-300 ; AAA_lid_14 306-368 ; AAA_lid_14 306-368
Cluster members and taxonomy
Representative gene: GCF_002301835#BGU47_RS03600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301835
AssemblyASM230183v1 · Contighaploid
Genome composition4 172 948 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 93 · HK 45 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key