1 Response_reg#1
9-117 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:9:9.42e-32:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU29_RS06490
Response regulator OmpR family
Clostridioides difficile · GCF_002301555
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002301555#BGU29_RS06490Stable P2CS identifier used across views.
GenomeGCF_002301555Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.5% of protein
Raw token
Trans_reg_C:156:4.42e-29:231:76:77- Raw architecture: Response_reg:9:9.42e-32:117:111:111#Trans_reg_C:156:4.42e-29:231:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002301555::NZ_MOQD01000005.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span245591-247604Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU29_06425RefSeq proteinWP_095895809.1
Context group ID
GCF_002301555::NZ_MOQD01000005.1::G00019Context members
BGU29_RS06490BGU29_RS06495
Partner locus tags
BGU29_RS06490BGU29_RS06495
Partner old locus tags
BGU29_06425BGU29_06430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095895809.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU29_RS06490Primary locus identifier stored in the genes table.
Old locus tagBGU29_06425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MOQD01000005.1Sequence record reported by the local genomic context database.
Genomic interval245 591-246 295 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span245 591-247 604 ntGCF_002301555::NZ_MOQD01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002301555::NZ_MOQD01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MOQD01000005.1All displayed genes belong to this local TCS context.
Neighborhood span245 591-247 604 nt2 014 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
245 591 nt247 604 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BGU29_RS06490GCF_002301555#BGU29_RS06490
RROmpRCurrent focus
245 591-246 295 nt · Forward (+)
BGU29_RS06495GCF_002301555#BGU29_RS06495
HKClassic
246 288-247 604 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301555#BGU29_RS06490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053637
Simplified PFAM architecture for RROC_1053637
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-116] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1053637
- Positioned domains: Response_reg 9-116 ; Response_reg 9-116 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_002301555#BGU29_RS06490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002301555
AssemblyASM230155v1 · Contighaploid
Genome composition4 219 026 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key