1 HisKA#1
655-726 aa · 72 aa · 7.9% of protein
Raw token
HisKA:655:0.00000000000000695:726:72:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGT97_RS02835
Histidine kinase, Classic
Clostridioides difficile · GCF_002300865
ClassHKTypeClassicLength912 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002300865#BGT97_RS02835Stable P2CS identifier used across views.
GenomeGCF_002300865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length912 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 912 aa (20.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
773-883 aa · 111 aa · 12.2% of protein
Raw token
HATPase_c:773:3.65e-31:883:111:109- Raw architecture: HisKA:655:0.00000000000000695:726:72:64#HATPase_c:773:3.65e-31:883:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002300865::NZ_MNBR01000007.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span26107-28845Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGT97_02800RefSeq proteinWP_095906447.1
Context group ID
GCF_002300865::NZ_MNBR01000007.1::G00006Context members
BGT97_RS02835
Partner locus tags
BGT97_RS02835
Partner old locus tags
BGT97_02800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095906447.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGT97_RS02835Primary locus identifier stored in the genes table.
Old locus tagBGT97_02800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MNBR01000007.1Sequence record reported by the local genomic context database.
Genomic interval26 107-28 845 nt2 739 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 107-28 845 ntGCF_002300865::NZ_MNBR01000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002300865::NZ_MNBR01000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MNBR01000007.1All displayed genes belong to this local TCS context.
Neighborhood span26 107-28 845 nt2 739 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 107 nt28 845 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGT97_RS02835GCF_002300865#BGT97_RS02835
HKClassicCurrent focus
26 107-28 845 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002300865#BGT97_RS02835The current gene is the representative for this cluster.
PFAM architecturePAS_8 + PAS_8 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0388057
Simplified PFAM architecture for HKOC_0388057
PFAM domain coverage: 279 / 912 aa (30.6%)
1 aa912 aa
PAS_8PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[303-355] | PAS_8[521-563] | HisKA[655-726] | HATPase_c[773-883]
- Domain count: 4
- Matched identifier: HKOC_0388057
- Positioned domains: PAS_8 303-355 ; PAS_8 521-563 ; HisKA 655-726 ; HATPase_c 773-883
Cluster members and taxonomy
Representative gene: GCF_002300865#BGT97_RS02835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002300865
AssemblyASM230086v1 · Contighaploid
Genome composition4 443 564 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key