1 Response_reg#1
5-112 aa · 108 aa · 42.0% of protein
Raw token
Response_reg:5:1.11e-20:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1H73_RS09690
Response regulator, unclassified
Streptococcus agalactiae · GCF_002239385
ClassRRTypeunclassifiedLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002239385#B1H73_RS09690Stable P2CS identifier used across views.
GenomeGCF_002239385Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage179 / 257 aa (69.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
157-198 aa · 42 aa · 16.3% of protein
Raw token
HTH_AraC:157:0.000000111:198:42:423 HTH_AraC#3
219-247 aa · 29 aa · 11.3% of protein
Raw token
HTH_AraC:219:0.0000138:247:29:42- Raw architecture: Response_reg:5:1.11e-20:112:110:111#HTH_AraC:157:0.000000111:198:42:42#HTH_AraC:219:0.0000138:247:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002239385::NZ_MVFR01000042.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78511-80937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB1H73_09650RefSeq proteinWP_000286068.1
Context group ID
GCF_002239385::NZ_MVFR01000042.1::G00018Context members
B1H73_RS09690B1H73_RS09695
Partner locus tags
B1H73_RS09690B1H73_RS09695
Partner old locus tags
B1H73_09650B1H73_09655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000286068.1Primary protein accession used for annex mappings.
UniProt accessionQ8DXA6Primary UniProt accession resolved in the annex database.
UniProt IDQ8DXA6_STRA5Display identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1H73_RS09690Primary locus identifier stored in the genes table.
Old locus tagB1H73_09650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MVFR01000042.1Sequence record reported by the local genomic context database.
Genomic interval78 511-79 284 nt774 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 511-80 937 ntGCF_002239385::NZ_MVFR01000042.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002239385::NZ_MVFR01000042.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MVFR01000042.1All displayed genes belong to this local TCS context.
Neighborhood span78 511-80 937 nt2 427 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 511 nt80 937 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B1H73_RS09690GCF_002239385#B1H73_RS09690
RRunclassifiedCurrent focus
78 511-79 284 nt · Reverse (-)
B1H73_RS09695GCF_002239385#B1H73_RS09695
HKClassic
79 288-80 937 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS12275Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0667053
Simplified PFAM architecture for RROC_0667053
PFAM domain coverage: 181 / 257 aa (70.4%)
1 aa257 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[5-114] | HTH_AraC[157-198] | HTH_AraC[219-247]
- Domain count: 3
- Matched identifier: RROC_0667053
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; HTH_AraC 157-198 ; HTH_AraC 157-198 ; HTH_AraC 219-247 ; HTH_AraC 219-247
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS12275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 311 · GCF_002239385
AssemblyASM223938v1 · Contighaploid
Genome composition2 143 030 bp · 35,5% GCStreptococcus agalactiae
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key