1 PAS#1
93-197 aa · 105 aa · 23.4% of protein
Raw token
PAS:93:0.000000013:197:112:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1H73_RS04030
Histidine kinase, Classic
Streptococcus agalactiae · GCF_002239385
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002239385#B1H73_RS04030Stable P2CS identifier used across views.
GenomeGCF_002239385Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage284 / 449 aa (63.3%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation3 items
2 HisKA#2
207-273 aa · 67 aa · 14.9% of protein
Raw token
HisKA:207:9.46e-18:273:67:643 HATPase_c#3
325-436 aa · 112 aa · 24.9% of protein
Raw token
HATPase_c:325:3.43e-34:436:112:109- Raw architecture: PAS:93:0.000000013:197:112:113#HisKA:207:9.46e-18:273:67:64#HATPase_c:325:3.43e-34:436:112:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002239385::NZ_MVFR01000017.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132281-134333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB1H73_04020RefSeq proteinWP_001065469.1
Context group ID
GCF_002239385::NZ_MVFR01000017.1::G00002Context members
B1H73_RS04025B1H73_RS04030
Partner locus tags
B1H73_RS04025B1H73_RS04030
Partner old locus tags
B1H73_04015B1H73_04020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001065469.1Primary protein accession used for annex mappings.
UniProt accessionA0AAD2WVT9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAD2WVT9_STRAGDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1H73_RS04030Primary locus identifier stored in the genes table.
Old locus tagB1H73_04020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MVFR01000017.1Sequence record reported by the local genomic context database.
Genomic interval132 984-134 333 nt1 350 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span132 281-134 333 ntGCF_002239385::NZ_MVFR01000017.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002239385::NZ_MVFR01000017.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MVFR01000017.1All displayed genes belong to this local TCS context.
Neighborhood span132 281-134 333 nt2 053 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 281 nt134 333 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B1H73_RS04025GCF_002239385#B1H73_RS04025
RROmpR
132 281-132 991 nt · Forward (+)
B1H73_RS04030GCF_002239385#B1H73_RS04030
HKClassicCurrent focus
132 984-134 333 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000012705#SAK_RS04235Use this link to inspect the representative gene detail.
PFAM architectureCovS-like_HAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1973190
Simplified PFAM architecture for HKOC_1973190
PFAM domain coverage: 312 / 449 aa (69.5%)
1 aa449 aa
CovS-like_HAMPPASHisKAHATPase_c
- Simplified architecture: CovS-like_HAMP + PAS + HisKA + HATPase_c
- Raw architecture: CovS-like_HAMP[31-86] | PAS[94-172] | HisKA[208-273] | HATPase_c[325-435]
- Domain count: 4
- Matched identifier: HKOC_1973190
- Positioned domains: CovS-like_HAMP 31-86 ; PAS 94-172 ; HisKA 208-273 ; HATPase_c 325-435
Cluster members and taxonomy
Representative gene: GCF_000012705#SAK_RS04235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 311 · GCF_002239385
AssemblyASM223938v1 · Contighaploid
Genome composition2 143 030 bp · 35,5% GCStreptococcus agalactiae
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key