1 Response_reg#1
6-115 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:6:1.47e-37:115:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1H73_RS02145
Response regulator OmpR family
Streptococcus agalactiae · GCF_002239385
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002239385#B1H73_RS02145Stable P2CS identifier used across views.
GenomeGCF_002239385Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:150:2.99e-27:226:77:77- Raw architecture: Response_reg:6:1.47e-37:115:110:111#Trans_reg_C:150:2.99e-27:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002239385::NZ_MVFR01000009.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49495-51220Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB1H73_02140RefSeq proteinWP_000192298.1
Context group ID
GCF_002239385::NZ_MVFR01000009.1::G00004Context members
B1H73_RS02145B1H73_RS02150
Partner locus tags
B1H73_RS02145B1H73_RS02150
Partner old locus tags
B1H73_02140B1H73_02145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000192298.1Primary protein accession used for annex mappings.
UniProt accessionQ8E1G2Primary UniProt accession resolved in the annex database.
UniProt IDQ8E1G2_STRA5Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1H73_RS02145Primary locus identifier stored in the genes table.
Old locus tagB1H73_02140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MVFR01000009.1Sequence record reported by the local genomic context database.
Genomic interval49 495-50 181 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 495-51 220 ntGCF_002239385::NZ_MVFR01000009.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002239385::NZ_MVFR01000009.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MVFR01000009.1All displayed genes belong to this local TCS context.
Neighborhood span49 495-51 220 nt1 726 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 495 nt51 220 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B1H73_RS02145GCF_002239385#B1H73_RS02145
RROmpRCurrent focus
49 495-50 181 nt · Forward (+)
B1H73_RS02150GCF_002239385#B1H73_RS02150
HKClassic
50 183-51 220 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023149315#LZU35_RS03685Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1101423
Simplified PFAM architecture for RROC_1101423
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1101423
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_023149315#LZU35_RS03685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 311 · GCF_002239385
AssemblyASM223938v1 · Contighaploid
Genome composition2 143 030 bp · 35,5% GCStreptococcus agalactiae
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key