1 HisKA_3#1
502-562 aa · 61 aa · 8.6% of protein
Raw token
HisKA_3:502:0.0000021:562:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CEU84_RS08130
Histidine kinase, Classic
Bacillus mycoides · GCF_002200005
ClassHKTypeClassicLength713 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002200005#CEU84_RS08130Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length713 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 713 aa (21.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa713 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
605-699 aa · 95 aa · 13.3% of protein
Raw token
HATPase_c:605:1.55e-20:699:105:109- Raw architecture: HisKA_3:502:0.0000021:562:65:68#HATPase_c:605:1.55e-20:699:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002200005::NZ_NIUP01000011.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104405-107126Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002200005::NZ_NIUP01000011.1::G00006Context members
CEU84_RS08125CEU84_RS08130
Partner locus tags
CEU84_RS08125CEU84_RS08130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088045445.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCEU84_RS08130Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NIUP01000011.1Sequence record reported by the local genomic context database.
Genomic interval104 985-107 126 nt2 142 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 405-107 126 ntGCF_002200005::NZ_NIUP01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002200005::NZ_NIUP01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIUP01000011.1All displayed genes belong to this local TCS context.
Neighborhood span104 405-107 126 nt2 722 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 405 nt107 126 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CEU84_RS08125GCF_002200005#CEU84_RS08125
RRNarL
104 405-105 013 nt · Reverse (-)
CEU84_RS08130GCF_002200005#CEU84_RS08130
HKClassicCurrent focus
104 985-107 126 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146775#BK735_RS21215Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0745769
Simplified PFAM architecture for HKOC_0745769
PFAM domain coverage: 95 / 713 aa (13.3%)
1 aa713 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[605-699]
- Domain count: 1
- Matched identifier: HKOC_0745769
- Positioned domains: HATPase_c 605-699
Cluster members and taxonomy
Representative gene: GCF_002146775#BK735_RS21215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002200005
AssemblyASM220000v1 · Scaffoldhaploid
Genome composition5 456 363 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key