1 PocR#1
7-75 aa · 69 aa · 11.6% of protein
Raw token
PocR:7:0.00000113:75:104:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CEU84_RS01240
Histidine kinase, Classic
Bacillus mycoides · GCF_002200005
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002200005#CEU84_RS01240Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage420 / 596 aa (70.5%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation5 items
2 PAS#2
131-211 aa · 81 aa · 13.6% of protein
Raw token
PAS:131:0.000000027:211:85:1133 PAS_4#3
255-358 aa · 104 aa · 17.4% of protein
Raw token
PAS_4:255:0.000000000000102:358:109:1104 HisKA#4
372-434 aa · 63 aa · 10.6% of protein
Raw token
HisKA:372:0.000000000000236:434:63:645 HATPase_c#5
479-581 aa · 103 aa · 17.3% of protein
Raw token
HATPase_c:479:5.13e-24:581:107:109- Raw architecture: PocR:7:0.00000113:75:104:162#PAS:131:0.000000027:211:85:113#PAS_4:255:0.000000000000102:358:109:110#HisKA:372:0.000000000000236:434:63:64#HATPase_c:479:5.13e-24:581:107:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002200005::NZ_NIUP01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span254461-256251Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002200005::NZ_NIUP01000001.1::G00003Context members
CEU84_RS01240
Partner locus tags
CEU84_RS01240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088290935.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCEU84_RS01240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NIUP01000001.1Sequence record reported by the local genomic context database.
Genomic interval254 461-256 251 nt1 791 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span254 461-256 251 ntGCF_002200005::NZ_NIUP01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002200005::NZ_NIUP01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIUP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span254 461-256 251 nt1 791 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
254 461 nt256 251 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CEU84_RS01240GCF_002200005#CEU84_RS01240
HKClassicCurrent focus
254 461-256 251 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002200005#CEU84_RS01240The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1074697
Simplified PFAM architecture for HKOC_1074697
PFAM domain coverage: 345 / 596 aa (57.9%)
1 aa596 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[131-206] | PAS_4[255-358] | HisKA[373-433] | HATPase_c[479-582]
- Domain count: 4
- Matched identifier: HKOC_1074697
- Positioned domains: PAS 131-206 ; PAS_4 255-358 ; HisKA 373-433 ; HATPase_c 479-582
Cluster members and taxonomy
Representative gene: GCF_002200005#CEU84_RS01240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002200005
AssemblyASM220000v1 · Scaffoldhaploid
Genome composition5 456 363 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key