1 Response_reg#1
3-98 aa · 96 aa · 41.9% of protein
Raw token
Response_reg:3:0.00000000484:98:97:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CA214_RS04845
Response regulator LytTR family
Enterococcus faecium · GCF_002119065
ClassRRTypeLytTRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002119065#CA214_RS04845Stable P2CS identifier used across views.
GenomeGCF_002119065Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 229 aa (75.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 LytTR#2
131-207 aa · 77 aa · 33.6% of protein
Raw token
LytTR:131:0.0000000000000431:207:82:98- Raw architecture: Response_reg:3:0.00000000484:98:97:111#LytTR:131:0.0000000000000431:207:82:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002119065::NZ_NETD01000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span938343-939032Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002119065::NZ_NETD01000001.1::G00007Context members
CA214_RS04845
Partner locus tags
CA214_RS04845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002348773.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3GUQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3GUQ6_ENTFCDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCA214_RS04845Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NETD01000001.1Sequence record reported by the local genomic context database.
Genomic interval938 343-939 032 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span938 343-939 032 ntGCF_002119065::NZ_NETD01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002119065::NZ_NETD01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NETD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span938 343-939 032 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
938 343 nt939 032 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CA214_RS04845GCF_002119065#CA214_RS04845
RRLytTRCurrent focus
938 343-939 032 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003312405#DMB18_RS08845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055211
Simplified PFAM architecture for RROC_1055211
PFAM domain coverage: 190 / 234 aa (81.2%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[8-106] | LytTR[137-227]
- Domain count: 2
- Matched identifier: RROC_1055211
- Positioned domains: Response_reg 8-106 ; Response_reg 8-106 ; LytTR 137-227 ; LytTR 137-227
Cluster members and taxonomy
Representative gene: GCF_003312405#DMB18_RS08845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_002119065
AssemblyASM211906v1 · Contighaploid
Genome composition3 145 597 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 39 · HK 19 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key