1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.00000000000216:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTJ44_RS26155
Histidine kinase, Classic
Bacillus mycoides · GCF_002118205
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002118205#BTJ44_RS26155Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 355 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.0000000000147:191:62:643 HATPase_c#3
242-350 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:242:2.71e-21:350:110:109- Raw architecture: HAMP:50:0.00000000000216:119:70:69#HisKA:130:0.0000000000147:191:62:64#HATPase_c:242:2.71e-21:350:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002118205::NZ_MRWS01000205.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span924765-926520Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBTJ44_03772RefSeq proteinWP_002141285.1
Context group ID
GCF_002118205::NZ_MRWS01000205.1::G00039Context members
BTJ44_RS26155BTJ44_RS26160
Partner locus tags
BTJ44_RS26155BTJ44_RS26160
Partner old locus tags
BTJ44_03772BTJ44_03773
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002141285.1Primary protein accession used for annex mappings.
UniProt accessionA0A653YPX0Primary UniProt accession resolved in the annex database.
UniProt IDA0A653YPX0_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTJ44_RS26155Primary locus identifier stored in the genes table.
Old locus tagBTJ44_03772Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MRWS01000205.1Sequence record reported by the local genomic context database.
Genomic interval924 765-925 832 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span924 765-926 520 ntGCF_002118205::NZ_MRWS01000205.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002118205::NZ_MRWS01000205.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MRWS01000205.1All displayed genes belong to this local TCS context.
Neighborhood span924 765-926 520 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
924 765 nt926 520 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTJ44_RS26155GCF_002118205#BTJ44_RS26155
HKClassicCurrent focus
924 765-925 832 nt · Reverse (-)
BTJ44_RS26160GCF_002118205#BTJ44_RS26160
RROmpR
925 822-926 520 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002118205#BTJ44_RS26155The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775785
Simplified PFAM architecture for HKOC_2775785
PFAM domain coverage: 221 / 355 aa (62.3%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-192] | HATPase_c[247-351]
- Domain count: 3
- Matched identifier: HKOC_2775785
- Positioned domains: HAMP 67-119 ; HisKA 130-192 ; HATPase_c 247-351
Cluster members and taxonomy
Representative gene: GCF_002118205#BTJ44_RS26155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002118205
AssemblyASM211820v1 · Scaffoldhaploid
Genome composition5 978 754 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 74 · RR 64CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key