1 HAMP#1
58-126 aa · 69 aa · 18.9% of protein
Raw token
HAMP:58:0.0000000000241:126:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTH38_RS01930
Histidine kinase, Classic
Bacillus toyonensis · GCF_002109455
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002109455#BTH38_RS01930Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 366 aa (65.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-199 aa · 62 aa · 16.9% of protein
Raw token
HisKA:138:0.000000000000527:199:62:643 HATPase_c#3
251-358 aa · 108 aa · 29.5% of protein
Raw token
HATPase_c:251:3.6e-21:358:109:109- Raw architecture: HAMP:58:0.0000000000241:126:69:69#HisKA:138:0.000000000000527:199:62:64#HATPase_c:251:3.6e-21:358:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002109455::NZ_MSAB01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span383264-385028Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBTH38_01905RefSeq proteinWP_139823454.1
Context group ID
GCF_002109455::NZ_MSAB01000001.1::G00005Context members
BTH38_RS01930BTH38_RS01935
Partner locus tags
BTH38_RS01930BTH38_RS01935
Partner old locus tags
BTH38_01905BTH38_01910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_139823454.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTH38_RS01930Primary locus identifier stored in the genes table.
Old locus tagBTH38_01905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MSAB01000001.1Sequence record reported by the local genomic context database.
Genomic interval383 264-384 364 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span383 264-385 028 ntGCF_002109455::NZ_MSAB01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002109455::NZ_MSAB01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MSAB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span383 264-385 028 nt1 765 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
383 264 nt385 028 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTH38_RS01930GCF_002109455#BTH38_RS01930
HKClassicCurrent focus
383 264-384 364 nt · Reverse (-)
BTH38_RS01935GCF_002109455#BTH38_RS01935
RROmpR
384 330-385 028 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002109455#BTH38_RS01930The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2713038
Simplified PFAM architecture for HKOC_2713038
PFAM domain coverage: 223 / 366 aa (60.9%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[75-126] | HisKA[138-200] | HATPase_c[252-359]
- Domain count: 3
- Matched identifier: HKOC_2713038
- Positioned domains: HAMP 75-126 ; HisKA 138-200 ; HATPase_c 252-359
Cluster members and taxonomy
Representative gene: GCF_002109455#BTH38_RS01930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002109455
AssemblyASM210945v1 · Scaffoldhaploid
Genome composition5 875 192 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key