1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:6.23e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTH38_RS01270
Response regulator OmpR family
Bacillus toyonensis · GCF_002109455
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002109455#BTH38_RS01270Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:148:1.04e-30:224:77:77- Raw architecture: Response_reg:4:6.23e-37:114:111:111#Trans_reg_C:148:1.04e-30:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002109455::NZ_MSAB01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span234157-236204Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBTH38_01255RefSeq proteinWP_000104235.1
Context group ID
GCF_002109455::NZ_MSAB01000001.1::G00001Context members
BTH38_RS01265BTH38_RS01270
Partner locus tags
BTH38_RS01265BTH38_RS01270
Partner old locus tags
BTH38_01250BTH38_01255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000104235.1Primary protein accession used for annex mappings.
UniProt accessionA0A1V6LC15Primary UniProt accession resolved in the annex database.
UniProt IDA0A1V6LC15_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTH38_RS01270Primary locus identifier stored in the genes table.
Old locus tagBTH38_01255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MSAB01000001.1Sequence record reported by the local genomic context database.
Genomic interval235 515-236 204 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span234 157-236 204 ntGCF_002109455::NZ_MSAB01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002109455::NZ_MSAB01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MSAB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span234 157-236 204 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
234 157 nt236 204 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTH38_RS01265GCF_002109455#BTH38_RS01265
HKClassic
234 157-235 518 nt · Reverse (-)
BTH38_RS01270GCF_002109455#BTH38_RS01270
RROmpRCurrent focus
235 515-236 204 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290815#IK3_RS17850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1248181
Simplified PFAM architecture for RROC_1248181
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1248181
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000290815#IK3_RS17850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002109455
AssemblyASM210945v1 · Scaffoldhaploid
Genome composition5 875 192 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key