1 Response_reg#1
10-82 aa · 73 aa · 34.3% of protein
Raw token
Response_reg:10:0.000000328:82:77:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMG18897_RS06900
Response regulator LytTR family
Bifidobacterium adolescentis · GCF_002108165
ClassRRTypeLytTRLength213 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002108165#LMG18897_RS06900Stable P2CS identifier used across views.
GenomeGCF_002108165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 213 aa (71.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 LytTR#2
110-188 aa · 79 aa · 37.1% of protein
Raw token
LytTR:110:1.93e-16:188:85:98- Raw architecture: Response_reg:10:0.000000328:82:77:111#LytTR:110:1.93e-16:188:85:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002108165::NZ_LNKM01000017.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9256-9897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMG18897_1360RefSeq proteinWP_085382635.1
Context group ID
GCF_002108165::NZ_LNKM01000017.1::G00005Context members
LMG18897_RS06900
Partner locus tags
LMG18897_RS06900
Partner old locus tags
LMG18897_1360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_085382635.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMG18897_RS06900Primary locus identifier stored in the genes table.
Old locus tagLMG18897_1360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKM01000017.1Sequence record reported by the local genomic context database.
Genomic interval9 256-9 897 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 256-9 897 ntGCF_002108165::NZ_LNKM01000017.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108165::NZ_LNKM01000017.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKM01000017.1All displayed genes belong to this local TCS context.
Neighborhood span9 256-9 897 nt642 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 256 nt9 897 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LMG18897_RS06900GCF_002108165#LMG18897_RS06900
RRLytTRCurrent focus
9 256-9 897 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108165#LMG18897_RS06900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1966164
Simplified PFAM architecture for RROC_1966164
PFAM domain coverage: 148 / 213 aa (69.5%)
1 aa213 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-82] | LytTR[111-181]
- Domain count: 2
- Matched identifier: RROC_1966164
- Positioned domains: Response_reg 6-82 ; Response_reg 6-82 ; LytTR 111-181 ; LytTR 111-181
Cluster members and taxonomy
Representative gene: GCF_002108165#LMG18897_RS06900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108165
AssemblyBadoLMG188971 · Contighaploid
Genome composition2 146 787 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key