1 Response_reg#1
12-93 aa · 82 aa · 88.2% of protein
Raw token
Response_reg:12:0.0000000000000103:93:82:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMG18897_RS01100
Response regulator, CheY family
Bifidobacterium adolescentis · GCF_002108165
ClassRRTypeCheYLength93 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002108165#LMG18897_RS01100Stable P2CS identifier used across views.
GenomeGCF_002108165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length93 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage82 / 93 aa (88.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa93 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:12:0.0000000000000103:93:82:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002108165::NZ_LNKM01000003.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-281Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002108165::NZ_LNKM01000003.1::G00007Context members
LMG18897_RS01100
Partner locus tags
LMG18897_RS01100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143240293.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMG18897_RS01100Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LNKM01000003.1Sequence record reported by the local genomic context database.
Genomic interval1-281 nt281 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-281 ntGCF_002108165::NZ_LNKM01000003.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108165::NZ_LNKM01000003.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span1-281 nt281 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt281 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LMG18897_RS01100GCF_002108165#LMG18897_RS01100
RRCheYCurrent focus
1-281 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108015#B0487_RS01315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1596230
Simplified PFAM architecture for RROC_1596230
PFAM domain coverage: 145 / 223 aa (65.0%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[26-115] | GerE[162-216]
- Domain count: 2
- Matched identifier: RROC_1596230
- Positioned domains: Response_reg 26-115 ; Response_reg 26-115 ; GerE 162-216 ; GerE 162-216
Cluster members and taxonomy
Representative gene: GCF_002108015#B0487_RS01315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108165
AssemblyBadoLMG188971 · Contighaploid
Genome composition2 146 787 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key