1 Response_reg#1
27-140 aa · 114 aa · 48.7% of protein
Raw token
Response_reg:27:1.35e-19:140:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMG18897_RS06755
Response regulator NarL family
Bifidobacterium adolescentis · GCF_002108165
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002108165#LMG18897_RS06755Stable P2CS identifier used across views.
GenomeGCF_002108165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 234 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
171-225 aa · 55 aa · 23.5% of protein
Raw token
HTH_LUXR:171:0.0000000000016:225:55:58- Raw architecture: Response_reg:27:1.35e-19:140:115:111#HTH_LUXR:171:0.0000000000016:225:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002108165::NZ_LNKM01000015.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73801-74505Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMG18897_1329RefSeq proteinWP_141730662.1
Context group ID
GCF_002108165::NZ_LNKM01000015.1::G00004Context members
LMG18897_RS06755
Partner locus tags
LMG18897_RS06755
Partner old locus tags
LMG18897_1329
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_141730662.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A2R880Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A2R880_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMG18897_RS06755Primary locus identifier stored in the genes table.
Old locus tagLMG18897_1329Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKM01000015.1Sequence record reported by the local genomic context database.
Genomic interval73 801-74 505 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 801-74 505 ntGCF_002108165::NZ_LNKM01000015.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108165::NZ_LNKM01000015.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKM01000015.1All displayed genes belong to this local TCS context.
Neighborhood span73 801-74 505 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 801 nt74 505 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LMG18897_RS06755GCF_002108165#LMG18897_RS06755
RRNarLCurrent focus
73 801-74 505 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108165#LMG18897_RS06755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053141
Simplified PFAM architecture for RROC_1053141
PFAM domain coverage: 169 / 234 aa (72.2%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[27-140] | GerE[171-225]
- Domain count: 2
- Matched identifier: RROC_1053141
- Positioned domains: Response_reg 27-140 ; Response_reg 27-140 ; GerE 171-225 ; GerE 171-225
Cluster members and taxonomy
Representative gene: GCF_002108165#LMG18897_RS06755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108165
AssemblyBadoLMG188971 · Contighaploid
Genome composition2 146 787 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key