1 Response_reg#1
10-123 aa · 114 aa · 50.4% of protein
Raw token
Response_reg:10:3.14e-18:123:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMG18897_RS02180
Response regulator NarL family
Bifidobacterium adolescentis · GCF_002108165
ClassRRTypeNarLLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002108165#LMG18897_RS02180Stable P2CS identifier used across views.
GenomeGCF_002108165Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 226 aa (76.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
163-220 aa · 58 aa · 25.7% of protein
Raw token
HTH_LUXR:163:2.79e-25:220:58:58- Raw architecture: Response_reg:10:3.14e-18:123:114:111#HTH_LUXR:163:2.79e-25:220:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002108165::NZ_LNKM01000006.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span46479-47159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMG18897_0430RefSeq proteinWP_026646471.1
Context group ID
GCF_002108165::NZ_LNKM01000006.1::G00010Context members
LMG18897_RS02180
Partner locus tags
LMG18897_RS02180
Partner old locus tags
LMG18897_0430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_026646471.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CWH5Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CWH5_BIFRUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMG18897_RS02180Primary locus identifier stored in the genes table.
Old locus tagLMG18897_0430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKM01000006.1Sequence record reported by the local genomic context database.
Genomic interval46 479-47 159 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 479-47 159 ntGCF_002108165::NZ_LNKM01000006.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108165::NZ_LNKM01000006.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKM01000006.1All displayed genes belong to this local TCS context.
Neighborhood span46 479-47 159 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 479 nt47 159 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LMG18897_RS02180GCF_002108165#LMG18897_RS02180
RRNarLCurrent focus
46 479-47 159 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000687635#T534_RS0104495Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1411810
Simplified PFAM architecture for RROC_1411810
PFAM domain coverage: 169 / 226 aa (74.8%)
1 aa226 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-122] | GerE[165-220]
- Domain count: 2
- Matched identifier: RROC_1411810
- Positioned domains: Response_reg 10-122 ; Response_reg 10-122 ; GerE 165-220 ; GerE 165-220
Cluster members and taxonomy
Representative gene: GCF_000687635#T534_RS0104495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108165
AssemblyBadoLMG188971 · Contighaploid
Genome composition2 146 787 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key