1 Response_reg#1
13-125 aa · 113 aa · 47.9% of protein
Raw token
Response_reg:13:0.000000000038:125:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMG10733_RS00410
Response regulator, unclassified
Bifidobacterium adolescentis · GCF_002108135
ClassRRTypeunclassifiedLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002108135#LMG10733_RS00410Stable P2CS identifier used across views.
GenomeGCF_002108135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 236 aa (47.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:13:0.000000000038:125:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002108135::NZ_LNKJ01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span95030-95740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMG10733_0075RefSeq proteinWP_180379529.1
Context group ID
GCF_002108135::NZ_LNKJ01000001.1::G00002Context members
LMG10733_RS00410
Partner locus tags
LMG10733_RS00410
Partner old locus tags
LMG10733_0075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_180379529.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMG10733_RS00410Primary locus identifier stored in the genes table.
Old locus tagLMG10733_0075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval95 030-95 740 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 030-95 740 ntGCF_002108135::NZ_LNKJ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108135::NZ_LNKJ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span95 030-95 740 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 030 nt95 740 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LMG10733_RS00410GCF_002108135#LMG10733_RS00410
RRunclassifiedCurrent focus
95 030-95 740 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108135#LMG10733_RS00410The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0993424
Simplified PFAM architecture for RROC_0993424
PFAM domain coverage: 109 / 236 aa (46.2%)
1 aa236 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[12-120]
- Domain count: 1
- Matched identifier: RROC_0993424
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120
Cluster members and taxonomy
Representative gene: GCF_002108135#LMG10733_RS00410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108135
AssemblyBadoLMG10733v1 · Contighaploid
Genome composition2 084 232 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key