1 HisKA_3#1
188-252 aa · 65 aa · 16.1% of protein
Raw token
HisKA_3:188:0.00000000000000249:252:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AD0028_RS06760
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_002108045
ClassHKTypeClassicLength404 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002108045#AD0028_RS06760Stable P2CS identifier used across views.
GenomeGCF_002108045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length404 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 404 aa (39.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa404 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
297-390 aa · 94 aa · 23.3% of protein
Raw token
HATPase_c:297:0.000000113:390:100:109- Raw architecture: HisKA_3:188:0.00000000000000249:252:65:68#HATPase_c:297:0.000000113:390:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002108045::NZ_LNKF01000004.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span198049-199967Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAD0028_1307RefSeq proteinWP_085408495.1
Context group ID
GCF_002108045::NZ_LNKF01000004.1::G00013Context members
AD0028_RS06755AD0028_RS06760
Partner locus tags
AD0028_RS06755AD0028_RS06760
Partner old locus tags
AD0028_1306AD0028_1307
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_085408495.1Primary protein accession used for annex mappings.
UniProt accessionA0A1X2ZHR9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1X2ZHR9_BIFADDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAD0028_RS06760Primary locus identifier stored in the genes table.
Old locus tagAD0028_1307Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKF01000004.1Sequence record reported by the local genomic context database.
Genomic interval198 753-199 967 nt1 215 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span198 049-199 967 ntGCF_002108045::NZ_LNKF01000004.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108045::NZ_LNKF01000004.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span198 049-199 967 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
198 049 nt199 967 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AD0028_RS06755GCF_002108045#AD0028_RS06755
RRNarL
198 049-198 753 nt · Reverse (-)
AD0028_RS06760GCF_002108045#AD0028_RS06760
HKClassicCurrent focus
198 753-199 967 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108045#AD0028_RS06760The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2407974
Simplified PFAM architecture for HKOC_2407974
PFAM domain coverage: 66 / 404 aa (16.3%)
1 aa404 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[188-253]
- Domain count: 1
- Matched identifier: HKOC_2407974
- Positioned domains: HisKA_3 188-253
Cluster members and taxonomy
Representative gene: GCF_002108045#AD0028_RS06760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108045
AssemblyBadoAD28v1 · Contighaploid
Genome composition2 379 716 bp · 60,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key