1 Response_reg#1
16-130 aa · 115 aa · 52.0% of protein
Raw token
Response_reg:16:8.97e-19:130:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B0487_RS00370
Response regulator NarL family
Bifidobacterium adolescentis · GCF_002108015
ClassRRTypeNarLLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002108015#B0487_RS00370Stable P2CS identifier used across views.
GenomeGCF_002108015Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 221 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-214 aa · 56 aa · 25.3% of protein
Raw token
HTH_LUXR:159:5.28e-18:214:56:58- Raw architecture: Response_reg:16:8.97e-19:130:116:111#HTH_LUXR:159:5.28e-18:214:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002108015::NZ_LNKD01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span87298-87963Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB0487_0067RefSeq proteinWP_085392708.1
Context group ID
GCF_002108015::NZ_LNKD01000001.1::G00001Context members
B0487_RS00370
Partner locus tags
B0487_RS00370
Partner old locus tags
B0487_0067
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_085392708.1Primary protein accession used for annex mappings.
UniProt accessionA0A1X2YYY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A1X2YYY8_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB0487_RS00370Primary locus identifier stored in the genes table.
Old locus tagB0487_0067Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKD01000001.1Sequence record reported by the local genomic context database.
Genomic interval87 298-87 963 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 298-87 963 ntGCF_002108015::NZ_LNKD01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002108015::NZ_LNKD01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span87 298-87 963 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 298 nt87 963 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B0487_RS00370GCF_002108015#B0487_RS00370
RRNarLCurrent focus
87 298-87 963 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108015#B0487_RS00370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1684531
Simplified PFAM architecture for RROC_1684531
PFAM domain coverage: 167 / 221 aa (75.6%)
1 aa221 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[16-129] | GerE[161-213]
- Domain count: 2
- Matched identifier: RROC_1684531
- Positioned domains: Response_reg 16-129 ; Response_reg 16-129 ; GerE 161-213 ; GerE 161-213
Cluster members and taxonomy
Representative gene: GCF_002108015#B0487_RS00370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002108015
AssemblyBado487Bv1 · Contighaploid
Genome composition2 597 776 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key