1 Response_reg#1
9-133 aa · 125 aa · 50.2% of protein
Raw token
Response_reg:9:3.58e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMG10734_RS03360
Response regulator NarL family
Bifidobacterium adolescentis · GCF_002107995
ClassRRTypeNarLLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002107995#LMG10734_RS03360Stable P2CS identifier used across views.
GenomeGCF_002107995Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 249 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
186-243 aa · 58 aa · 23.3% of protein
Raw token
HTH_LUXR:186:3.3e-23:243:58:58- Raw architecture: Response_reg:9:3.58e-28:133:125:111#HTH_LUXR:186:3.3e-23:243:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002107995::NZ_LNKK01000002.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span535533-536282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMG10734_0636RefSeq proteinWP_085380280.1
Context group ID
GCF_002107995::NZ_LNKK01000002.1::G00008Context members
LMG10734_RS03360
Partner locus tags
LMG10734_RS03360
Partner old locus tags
LMG10734_0636
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_085380280.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMG10734_RS03360Primary locus identifier stored in the genes table.
Old locus tagLMG10734_0636Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKK01000002.1Sequence record reported by the local genomic context database.
Genomic interval535 533-536 282 nt750 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span535 533-536 282 ntGCF_002107995::NZ_LNKK01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002107995::NZ_LNKK01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span535 533-536 282 nt750 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
535 533 nt536 282 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LMG10734_RS03360GCF_002107995#LMG10734_RS03360
RRNarLCurrent focus
535 533-536 282 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002107995#LMG10734_RS03360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0733697
Simplified PFAM architecture for RROC_0733697
PFAM domain coverage: 180 / 249 aa (72.3%)
1 aa249 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[188-243]
- Domain count: 2
- Matched identifier: RROC_0733697
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 188-243 ; GerE 188-243
Cluster members and taxonomy
Representative gene: GCF_002107995#LMG10734_RS03360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002107995
AssemblyBadoLMG10734v1 · Contighaploid
Genome composition2 148 629 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key