1 Response_reg#1
8-108 aa · 101 aa · 42.4% of protein
Raw token
Response_reg:8:8.68e-20:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B0070_RS08880
Response regulator LytTR family
Bifidobacterium adolescentis · GCF_002107955
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002107955#B0070_RS08880Stable P2CS identifier used across views.
GenomeGCF_002107955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 238 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:8.82e-21:230:97:98- Raw architecture: Response_reg:8:8.68e-20:108:106:111#LytTR:139:8.82e-21:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002107955::NZ_LNKC01000010.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33475-34191Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB0070_1715RefSeq proteinWP_179140325.1
Context group ID
GCF_002107955::NZ_LNKC01000010.1::G00002Context members
B0070_RS08880
Partner locus tags
B0070_RS08880
Partner old locus tags
B0070_1715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_179140325.1Primary protein accession used for annex mappings.
UniProt accessionA0A1X2YRD3Primary UniProt accession resolved in the annex database.
UniProt IDA0A1X2YRD3_BIFADDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB0070_RS08880Primary locus identifier stored in the genes table.
Old locus tagB0070_1715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKC01000010.1Sequence record reported by the local genomic context database.
Genomic interval33 475-34 191 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 475-34 191 ntGCF_002107955::NZ_LNKC01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002107955::NZ_LNKC01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKC01000010.1All displayed genes belong to this local TCS context.
Neighborhood span33 475-34 191 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 475 nt34 191 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B0070_RS08880GCF_002107955#B0070_RS08880
RRLytTRCurrent focus
33 475-34 191 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002107955#B0070_RS08880The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0937929
Simplified PFAM architecture for RROC_0937929
PFAM domain coverage: 192 / 238 aa (80.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-109] | LytTR[142-230]
- Domain count: 2
- Matched identifier: RROC_0937929
- Positioned domains: Response_reg 7-109 ; Response_reg 7-109 ; LytTR 142-230 ; LytTR 142-230
Cluster members and taxonomy
Representative gene: GCF_002107955#B0070_RS08880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002107955
AssemblyBado70Bv1 · Contighaploid
Genome composition2 212 129 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key