1 Response_reg#1
14-120 aa · 107 aa · 51.2% of protein
Raw token
Response_reg:14:0.00000000218:120:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B0070_RS00955
Response regulator NarL family
Bifidobacterium adolescentis · GCF_002107955
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002107955#B0070_RS00955Stable P2CS identifier used across views.
GenomeGCF_002107955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 209 aa (69.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-206 aa · 38 aa · 18.2% of protein
Raw token
HTH_LUXR:169:0.0000000873:206:38:58- Raw architecture: Response_reg:14:0.00000000218:120:107:111#HTH_LUXR:169:0.0000000873:206:38:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002107955::NZ_LNKC01000002.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12271-12900Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB0070_0182RefSeq proteinWP_085407486.1
Context group ID
GCF_002107955::NZ_LNKC01000002.1::G00003Context members
B0070_RS00955
Partner locus tags
B0070_RS00955
Partner old locus tags
B0070_0182
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_085407486.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB0070_RS00955Primary locus identifier stored in the genes table.
Old locus tagB0070_0182Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LNKC01000002.1Sequence record reported by the local genomic context database.
Genomic interval12 271-12 900 nt630 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 271-12 900 ntGCF_002107955::NZ_LNKC01000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002107955::NZ_LNKC01000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LNKC01000002.1All displayed genes belong to this local TCS context.
Neighborhood span12 271-12 900 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 271 nt12 900 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B0070_RS00955GCF_002107955#B0070_RS00955
RRNarLCurrent focus
12 271-12 900 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002107955#B0070_RS00955The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2044026
Simplified PFAM architecture for RROC_2044026
PFAM domain coverage: 146 / 209 aa (69.9%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[14-121] | GerE[168-205]
- Domain count: 2
- Matched identifier: RROC_2044026
- Positioned domains: Response_reg 14-121 ; Response_reg 14-121 ; GerE 168-205 ; GerE 168-205
Cluster members and taxonomy
Representative gene: GCF_002107955#B0070_RS00955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_002107955
AssemblyBado70Bv1 · Contighaploid
Genome composition2 212 129 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key