1 Response_reg#1
6-115 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:6:1.39e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B7492_RS31445
Response regulator OmpR family
Bacillus mycoides · GCF_002104575
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002104575#B7492_RS31445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:150:9.63e-29:219:75:77- Raw architecture: Response_reg:6:1.39e-33:115:111:111#Trans_reg_C:150:9.63e-29:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002104575::NZ_CP020744.1::G00070
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span409572-411654Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB7492_31415RefSeq proteinWP_085313288.1
Context group ID
GCF_002104575::NZ_CP020744.1::G00070Context members
B7492_RS31440B7492_RS31445
Partner locus tags
B7492_RS31440B7492_RS31445
Partner old locus tags
B7492_31410B7492_31415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_085313288.1Primary protein accession used for annex mappings.
UniProt accessionA0A1W6AIK8Primary UniProt accession resolved in the annex database.
UniProt IDA0A1W6AIK8_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB7492_RS31445Primary locus identifier stored in the genes table.
Old locus tagB7492_31415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP020744.1Sequence record reported by the local genomic context database.
Genomic interval410 989-411 654 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span409 572-411 654 ntGCF_002104575::NZ_CP020744.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002104575::NZ_CP020744.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP020744.1All displayed genes belong to this local TCS context.
Neighborhood span409 572-411 654 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
409 572 nt411 654 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B7492_RS31440GCF_002104575#B7492_RS31440
HKClassic
409 572-410 996 nt · Reverse (-)
B7492_RS31445GCF_002104575#B7492_RS31445
RROmpRCurrent focus
410 989-411 654 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002104575#B7492_RS31445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1684523
Simplified PFAM architecture for RROC_1684523
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-218]
- Domain count: 2
- Matched identifier: RROC_1684523
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 150-218 ; Trans_reg_C 150-218
Cluster members and taxonomy
Representative gene: GCF_002104575#B7492_RS31445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002104575
AssemblyASM210457v1 · Complete Genomehaploid
Genome composition6 558 090 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key