1 Response_reg#1
4-116 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:4:5.67e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B7492_RS28725
Response regulator NarL family
Bacillus mycoides · GCF_002104575
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002104575#B7492_RS28725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
139-194 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:139:1.76e-20:194:56:58- Raw architecture: Response_reg:4:5.67e-27:116:113:111#HTH_LUXR:139:1.76e-20:194:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002104575::NZ_CP020743.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5446326-5448052Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB7492_28695RefSeq proteinWP_085312865.1
Context group ID
GCF_002104575::NZ_CP020743.1::G00062Context members
B7492_RS28725B7492_RS28730
Partner locus tags
B7492_RS28725B7492_RS28730
Partner old locus tags
B7492_28695B7492_28700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_085312865.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C4GB95Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C4GB95_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB7492_RS28725Primary locus identifier stored in the genes table.
Old locus tagB7492_28695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP020743.1Sequence record reported by the local genomic context database.
Genomic interval5 446 326-5 446 928 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 446 326-5 448 052 ntGCF_002104575::NZ_CP020743.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002104575::NZ_CP020743.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP020743.1All displayed genes belong to this local TCS context.
Neighborhood span5 446 326-5 448 052 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 446 326 nt5 448 052 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B7492_RS28725GCF_002104575#B7492_RS28725
RRNarLCurrent focus
5 446 326-5 446 928 nt · Reverse (-)
B7492_RS28730GCF_002104575#B7492_RS28730
HKClassic
5 446 925-5 448 052 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002104575#B7492_RS28725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2136120
Simplified PFAM architecture for RROC_2136120
PFAM domain coverage: 169 / 200 aa (84.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[139-194]
- Domain count: 2
- Matched identifier: RROC_2136120
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 139-194 ; GerE 139-194
Cluster members and taxonomy
Representative gene: GCF_002104575#B7492_RS28725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002104575
AssemblyASM210457v1 · Complete Genomehaploid
Genome composition6 558 090 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key