1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:3.35e-22:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B7492_RS23730
Response regulator OmpR family
Bacillus mycoides · GCF_002104575
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002104575#B7492_RS23730Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:150:5.12e-28:225:77:77- Raw architecture: Response_reg:4:3.35e-22:113:111:111#Trans_reg_C:150:5.12e-28:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002104575::NZ_CP020743.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4534893-4536672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB7492_23710RefSeq proteinWP_061689570.1
Context group ID
GCF_002104575::NZ_CP020743.1::G00049Context members
B7492_RS23725B7492_RS23730
Partner locus tags
B7492_RS23725B7492_RS23730
Partner old locus tags
B7492_23705B7492_23710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_061689570.1Primary protein accession used for annex mappings.
UniProt accessionA0A1W6ADN5Primary UniProt accession resolved in the annex database.
UniProt IDA0A1W6ADN5_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB7492_RS23730Primary locus identifier stored in the genes table.
Old locus tagB7492_23710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP020743.1Sequence record reported by the local genomic context database.
Genomic interval4 535 965-4 536 672 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 534 893-4 536 672 ntGCF_002104575::NZ_CP020743.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002104575::NZ_CP020743.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP020743.1All displayed genes belong to this local TCS context.
Neighborhood span4 534 893-4 536 672 nt1 780 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 534 893 nt4 536 672 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B7492_RS23725GCF_002104575#B7492_RS23725
HKClassic
4 534 893-4 535 975 nt · Reverse (-)
B7492_RS23730GCF_002104575#B7492_RS23730
RROmpRCurrent focus
4 535 965-4 536 672 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002104575#B7492_RS23730The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1022149
Simplified PFAM architecture for RROC_1022149
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1022149
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_002104575#B7492_RS23730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002104575
AssemblyASM210457v1 · Complete Genomehaploid
Genome composition6 558 090 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key