1 HAMP#1
200-263 aa · 64 aa · 12.8% of protein
Raw token
HAMP:200:0.0000000000383:263:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDB3_RS00655
Histidine kinase, Classic
Bacillus sp. CDB3 · GCF_002081505
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002081505#CDB3_RS00655Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 501 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
276-343 aa · 68 aa · 13.6% of protein
Raw token
HisKA:276:7.56e-16:343:68:643 HATPase_c#3
390-498 aa · 109 aa · 21.8% of protein
Raw token
HATPase_c:390:1.9e-21:498:112:109- Raw architecture: HAMP:200:0.0000000000383:263:64:69#HisKA:276:7.56e-16:343:68:64#HATPase_c:390:1.9e-21:498:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002081505::NZ_ALBR01000005.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span224-2414Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDB3_00665RefSeq proteinWP_128853215.1
Context group ID
GCF_002081505::NZ_ALBR01000005.1::G00002Context members
CDB3_RS00655CDB3_RS00660
Partner locus tags
CDB3_RS00655CDB3_RS00660
Partner old locus tags
CDB3_00665CDB3_00670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_128853215.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDB3_RS00655Primary locus identifier stored in the genes table.
Old locus tagCDB3_00665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ALBR01000005.1Sequence record reported by the local genomic context database.
Genomic interval224-1 729 nt1 506 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span224-2 414 ntGCF_002081505::NZ_ALBR01000005.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002081505::NZ_ALBR01000005.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ALBR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span224-2 414 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
224 nt2 414 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDB3_RS00655GCF_002081505#CDB3_RS00655
HKClassicCurrent focus
224-1 729 nt · Reverse (-)
CDB3_RS00660GCF_002081505#CDB3_RS00660
RROmpR
1 713-2 414 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002081505#CDB3_RS00655The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1469359
Simplified PFAM architecture for HKOC_1469359
PFAM domain coverage: 209 / 501 aa (41.7%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[220-263] | HisKA[276-342] | HATPase_c[390-487]
- Domain count: 3
- Matched identifier: HKOC_1469359
- Positioned domains: HAMP 220-263 ; HisKA 276-342 ; HATPase_c 390-487
Cluster members and taxonomy
Representative gene: GCF_002081505#CDB3_RS00655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 360 310 · GCF_002081505
AssemblyASM208150v1 · Contighaploid
Genome composition5 915 726 bp · 35,5% GCBacillus sp. CDB3
Signal transduction countsGenes 99 · HK 51 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key