1 HisKA#1
234-299 aa · 66 aa · 14.5% of protein
Raw token
HisKA:234:0.00000000000000292:299:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5785_RS11220
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_002076025
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002076025#B5785_RS11220Stable P2CS identifier used across views.
GenomeGCF_002076025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 454 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-453 aa · 110 aa · 24.2% of protein
Raw token
HATPase_c:344:1.06e-20:453:110:109- Raw architecture: HisKA:234:0.00000000000000292:299:66:64#HATPase_c:344:1.06e-20:453:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002076025::NZ_NAQJ01000019.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7739-9753Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5785_2140RefSeq proteinWP_060620947.1
Context group ID
GCF_002076025::NZ_NAQJ01000019.1::G00012Context members
B5785_RS11215B5785_RS11220
Partner locus tags
B5785_RS11215B5785_RS11220
Partner old locus tags
B5785_2139B5785_2140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060620947.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M4MFK6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M4MFK6_BIFLIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5785_RS11220Primary locus identifier stored in the genes table.
Old locus tagB5785_2140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NAQJ01000019.1Sequence record reported by the local genomic context database.
Genomic interval8 389-9 753 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 739-9 753 ntGCF_002076025::NZ_NAQJ01000019.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002076025::NZ_NAQJ01000019.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQJ01000019.1All displayed genes belong to this local TCS context.
Neighborhood span7 739-9 753 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 739 nt9 753 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5785_RS11215GCF_002076025#B5785_RS11215
RROmpR
7 739-8 404 nt · Forward (+)
B5785_RS11220GCF_002076025#B5785_RS11220
HKClassicCurrent focus
8 389-9 753 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002076025#B5785_RS11220The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1914114
Simplified PFAM architecture for HKOC_1914114
PFAM domain coverage: 174 / 454 aa (38.3%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-297] | HATPase_c[344-453]
- Domain count: 2
- Matched identifier: HKOC_1914114
- Positioned domains: HisKA 234-297 ; HATPase_c 344-453
Cluster members and taxonomy
Representative gene: GCF_002076025#B5785_RS11220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_002076025
AssemblyBbif1888B · Contighaploid
Genome composition2 579 732 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key