1 Response_reg#1
13-95 aa · 83 aa · 36.1% of protein
Raw token
Response_reg:13:0.0000000000354:95:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5780_RS00160
Response regulator NarL family
Bifidobacterium longum · GCF_002075935
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002075935#B5780_RS00160Stable P2CS identifier used across views.
GenomeGCF_002075935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage138 / 230 aa (60.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-223 aa · 55 aa · 23.9% of protein
Raw token
HTH_LUXR:169:3.44e-16:223:55:58- Raw architecture: Response_reg:13:0.0000000000354:95:83:111#HTH_LUXR:169:3.44e-16:223:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002075935::NZ_NAQC01000002.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9486-10178Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5780_0029RefSeq proteinWP_080784392.1
Context group ID
GCF_002075935::NZ_NAQC01000002.1::G00002Context members
B5780_RS00160
Partner locus tags
B5780_RS00160
Partner old locus tags
B5780_0029
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_080784392.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35S903Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35S903_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5780_RS00160Primary locus identifier stored in the genes table.
Old locus tagB5780_0029Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NAQC01000002.1Sequence record reported by the local genomic context database.
Genomic interval9 486-10 178 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 486-10 178 ntGCF_002075935::NZ_NAQC01000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002075935::NZ_NAQC01000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NAQC01000002.1All displayed genes belong to this local TCS context.
Neighborhood span9 486-10 178 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 486 nt10 178 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5780_RS00160GCF_002075935#B5780_RS00160
RRNarLCurrent focus
9 486-10 178 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002075935#B5780_RS00160The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1207802
Simplified PFAM architecture for RROC_1207802
PFAM domain coverage: 157 / 230 aa (68.3%)
1 aa230 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-115] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1207802
- Positioned domains: Response_reg 12-115 ; Response_reg 12-115 ; GerE 170-222 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_002075935#B5780_RS00160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_002075935
AssemblyBbif1897B · Contighaploid
Genome composition2 453 605 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key