1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:0.00000000000000235:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLX04_RS26905
Histidine kinase, Classic
Bacillus mycoides · GCF_002014655
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014655#BLX04_RS26905Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 458 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000168:303:61:643 HATPase_c#3
349-455 aa · 107 aa · 23.4% of protein
Raw token
HATPase_c:349:8.19e-18:455:111:109- Raw architecture: HAMP:165:0.00000000000000235:232:68:69#HisKA:244:0.00000000000168:303:61:64#HATPase_c:349:8.19e-18:455:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014655::NZ_MUAS01000038.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6020-8036Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLX04_26910RefSeq proteinWP_078185907.1
Context group ID
GCF_002014655::NZ_MUAS01000038.1::G00039Context members
BLX04_RS26900BLX04_RS26905
Partner locus tags
BLX04_RS26900BLX04_RS26905
Partner old locus tags
BLX04_26905BLX04_26910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078185907.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLX04_RS26905Primary locus identifier stored in the genes table.
Old locus tagBLX04_26910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAS01000038.1Sequence record reported by the local genomic context database.
Genomic interval6 660-8 036 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 020-8 036 ntGCF_002014655::NZ_MUAS01000038.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014655::NZ_MUAS01000038.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAS01000038.1All displayed genes belong to this local TCS context.
Neighborhood span6 020-8 036 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 020 nt8 036 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLX04_RS26900GCF_002014655#BLX04_RS26900
RROmpR
6 020-6 667 nt · Forward (+)
BLX04_RS26905GCF_002014655#BLX04_RS26905
HKClassicCurrent focus
6 660-8 036 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014655#BLX04_RS26905The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1860984
Simplified PFAM architecture for HKOC_1860984
PFAM domain coverage: 216 / 458 aa (47.2%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-455]
- Domain count: 3
- Matched identifier: HKOC_1860984
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-455
Cluster members and taxonomy
Representative gene: GCF_002014655#BLX04_RS26905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014655
AssemblyASM201465v1 · Contighaploid
Genome composition5 482 614 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 120 · HK 63 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key