1 Response_reg#1
9-118 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:9:5.89e-37:118:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW897_RS21535
Response regulator OmpR family
Bacillus cereus · GCF_002014585
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014585#BW897_RS21535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 228 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-224 aa · 71 aa · 31.1% of protein
Raw token
Trans_reg_C:154:5.52e-28:224:73:77- Raw architecture: Response_reg:9:5.89e-37:118:110:111#Trans_reg_C:154:5.52e-28:224:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014585::NZ_MUAJ01000024.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17404-19607Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW897_21550RefSeq proteinWP_078205168.1
Context group ID
GCF_002014585::NZ_MUAJ01000024.1::G00028Context members
BW897_RS21535BW897_RS21540
Partner locus tags
BW897_RS21535BW897_RS21540
Partner old locus tags
BW897_21550BW897_21555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078205168.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TLG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TLG8_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW897_RS21535Primary locus identifier stored in the genes table.
Old locus tagBW897_21550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAJ01000024.1Sequence record reported by the local genomic context database.
Genomic interval17 404-18 090 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 404-19 607 ntGCF_002014585::NZ_MUAJ01000024.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014585::NZ_MUAJ01000024.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAJ01000024.1All displayed genes belong to this local TCS context.
Neighborhood span17 404-19 607 nt2 204 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 404 nt19 607 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW897_RS21535GCF_002014585#BW897_RS21535
RROmpRCurrent focus
17 404-18 090 nt · Forward (+)
BW897_RS21540GCF_002014585#BW897_RS21540
HKClassic
18 087-19 607 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014585#BW897_RS21535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1311066
Simplified PFAM architecture for RROC_1311066
PFAM domain coverage: 181 / 228 aa (79.4%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-118] | Trans_reg_C[154-224]
- Domain count: 2
- Matched identifier: RROC_1311066
- Positioned domains: Response_reg 9-118 ; Response_reg 9-118 ; Trans_reg_C 154-224 ; Trans_reg_C 154-224
Cluster members and taxonomy
Representative gene: GCF_002014585#BW897_RS21535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002014585
AssemblyASM201458v1 · Contighaploid
Genome composition6 248 992 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key