1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:2.49e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW892_RS20305
Response regulator OmpR family
Bacillus cereus · GCF_002014575
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_002014575#BW892_RS20305Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:155:2.76e-33:229:75:77- Raw architecture: Response_reg:5:2.49e-39:114:111:111#Trans_reg_C:155:2.76e-33:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_002014575::NZ_MUAL01000049.1::G00055
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span865-4940Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW892_20345RefSeq proteinWP_078181386.1
Context group ID
GCF_002014575::NZ_MUAL01000049.1::G00055Context members
BW892_RS20300BW892_RS20305BW892_RS20310
Partner locus tags
BW892_RS20300BW892_RS20305BW892_RS20310
Partner old locus tags
BW892_20340BW892_20345BW892_20350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078181386.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9UK45Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9UK45_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW892_RS20305Primary locus identifier stored in the genes table.
Old locus tagBW892_20345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAL01000049.1Sequence record reported by the local genomic context database.
Genomic interval3 151-3 864 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span865-4 940 ntGCF_002014575::NZ_MUAL01000049.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014575::NZ_MUAL01000049.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAL01000049.1All displayed genes belong to this local TCS context.
Neighborhood span865-4 940 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
865 nt4 940 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
BW892_RS20300GCF_002014575#BW892_RS20300
HKClassic
865-2 655 nt · Forward (+)
BW892_RS20305GCF_002014575#BW892_RS20305
RROmpRCurrent focus
3 151-3 864 nt · Forward (+)
BW892_RS20310GCF_002014575#BW892_RS20310
HKClassic
3 861-4 940 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014575#BW892_RS20305The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0966230
Simplified PFAM architecture for RROC_0966230
PFAM domain coverage: 184 / 237 aa (77.6%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_0966230
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_002014575#BW892_RS20305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002014575
AssemblyASM201457v1 · Contighaploid
Genome composition5 668 335 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 114 · HK 63 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key