1 Response_reg#1
4-113 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:4:1.19e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW900_RS29490
Response regulator OmpR family
Bacillus mycoides · GCF_002014535
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014535#BW900_RS29490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 236 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 32.2% of protein
Raw token
Trans_reg_C:153:3.59e-31:228:76:77- Raw architecture: Response_reg:4:1.19e-38:113:111:111#Trans_reg_C:153:3.59e-31:228:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014535::NZ_MUAI01000069.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6322-8108Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW900_29520RefSeq proteinWP_078177345.1
Context group ID
GCF_002014535::NZ_MUAI01000069.1::G00062Context members
BW900_RS29485BW900_RS29490
Partner locus tags
BW900_RS29485BW900_RS29490
Partner old locus tags
BW900_29515BW900_29520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078177345.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9SZ93Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9SZ93_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW900_RS29490Primary locus identifier stored in the genes table.
Old locus tagBW900_29520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAI01000069.1Sequence record reported by the local genomic context database.
Genomic interval7 398-8 108 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 322-8 108 ntGCF_002014535::NZ_MUAI01000069.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014535::NZ_MUAI01000069.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAI01000069.1All displayed genes belong to this local TCS context.
Neighborhood span6 322-8 108 nt1 787 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 322 nt8 108 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW900_RS29485GCF_002014535#BW900_RS29485
HKClassic
6 322-7 401 nt · Reverse (-)
BW900_RS29490GCF_002014535#BW900_RS29490
RROmpRCurrent focus
7 398-8 108 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014535#BW900_RS29490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0993265
Simplified PFAM architecture for RROC_0993265
PFAM domain coverage: 185 / 236 aa (78.4%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_0993265
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_002014535#BW900_RS29490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014535
AssemblyASM201453v1 · Contighaploid
Genome composition6 068 254 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 124 · HK 67 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key