1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:2.03e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW899_RS26165
Response regulator OmpR family
Bacillus mycoides · GCF_002014505
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014505#BW899_RS26165Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:152:1.62e-34:228:77:77- Raw architecture: Response_reg:5:2.03e-41:114:111:111#Trans_reg_C:152:1.62e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014505::NZ_MUAH01000021.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53447-55212Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW899_26130RefSeq proteinWP_078203991.1
Context group ID
GCF_002014505::NZ_MUAH01000021.1::G00039Context members
BW899_RS26165BW899_RS26170
Partner locus tags
BW899_RS26165BW899_RS26170
Partner old locus tags
BW899_26130BW899_26135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078203991.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW899_RS26165Primary locus identifier stored in the genes table.
Old locus tagBW899_26130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAH01000021.1Sequence record reported by the local genomic context database.
Genomic interval53 447-54 133 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 447-55 212 ntGCF_002014505::NZ_MUAH01000021.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014505::NZ_MUAH01000021.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAH01000021.1All displayed genes belong to this local TCS context.
Neighborhood span53 447-55 212 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 447 nt55 212 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW899_RS26165GCF_002014505#BW899_RS26165
RROmpRCurrent focus
53 447-54 133 nt · Forward (+)
BW899_RS26170GCF_002014505#BW899_RS26170
HKClassic
54 130-55 212 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014505#BW899_RS26165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1311062
Simplified PFAM architecture for RROC_1311062
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1311062
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_002014505#BW899_RS26165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014505
AssemblyASM201450v1 · Contighaploid
Genome composition5 763 336 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 136 · HK 75 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key