1 HAMP#1
168-234 aa · 67 aa · 14.4% of protein
Raw token
HAMP:168:3.83e-16:234:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW899_RS01500
Histidine kinase, Classic
Bacillus mycoides · GCF_002014505
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014505#BW899_RS01500Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 466 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.4% of protein
Raw token
HisKA:238:3.52e-19:304:67:643 HATPase_c#3
350-460 aa · 111 aa · 23.8% of protein
Raw token
HATPase_c:350:3.58e-33:460:111:109- Raw architecture: HAMP:168:3.83e-16:234:67:69#HisKA:238:3.52e-19:304:67:64#HATPase_c:350:3.58e-33:460:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014505::NZ_MUAH01000001.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span278787-280862Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW899_01500RefSeq proteinWP_078202985.1
Context group ID
GCF_002014505::NZ_MUAH01000001.1::G00027Context members
BW899_RS01495BW899_RS01500
Partner locus tags
BW899_RS01495BW899_RS01500
Partner old locus tags
BW899_01495BW899_01500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078202985.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW899_RS01500Primary locus identifier stored in the genes table.
Old locus tagBW899_01500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAH01000001.1Sequence record reported by the local genomic context database.
Genomic interval279 462-280 862 nt1 401 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span278 787-280 862 ntGCF_002014505::NZ_MUAH01000001.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014505::NZ_MUAH01000001.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span278 787-280 862 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
278 787 nt280 862 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW899_RS01495GCF_002014505#BW899_RS01495
RROmpR
278 787-279 458 nt · Forward (+)
BW899_RS01500GCF_002014505#BW899_RS01500
HKClassicCurrent focus
279 462-280 862 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014505#BW899_RS01500The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1763609
Simplified PFAM architecture for HKOC_1763609
PFAM domain coverage: 224 / 466 aa (48.1%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-233] | HisKA[239-303] | HATPase_c[350-460]
- Domain count: 3
- Matched identifier: HKOC_1763609
- Positioned domains: HAMP 186-233 ; HisKA 239-303 ; HATPase_c 350-460
Cluster members and taxonomy
Representative gene: GCF_002014505#BW899_RS01500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002014505
AssemblyASM201450v1 · Contighaploid
Genome composition5 763 336 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 136 · HK 75 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key