1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.00000000434:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW898_RS16030
Histidine kinase, Classic
Bacillus cereus · GCF_002014485
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002014485#BW898_RS16030Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 359 aa (69.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 18.9% of protein
Raw token
HisKA:120:9.81e-18:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:238:7.63e-27:348:111:109- Raw architecture: HAMP:39:0.00000000434:109:71:69#HisKA:120:9.81e-18:187:68:64#HATPase_c:238:7.63e-27:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002014485::NZ_MUAG01000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44248-46037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW898_16045RefSeq proteinWP_078174107.1
Context group ID
GCF_002014485::NZ_MUAG01000011.1::G00002Context members
BW898_RS16030BW898_RS16035
Partner locus tags
BW898_RS16030BW898_RS16035
Partner old locus tags
BW898_16045BW898_16050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078174107.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9UIN6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9UIN6_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW898_RS16030Primary locus identifier stored in the genes table.
Old locus tagBW898_16045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MUAG01000011.1Sequence record reported by the local genomic context database.
Genomic interval44 248-45 327 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 248-46 037 ntGCF_002014485::NZ_MUAG01000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002014485::NZ_MUAG01000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MUAG01000011.1All displayed genes belong to this local TCS context.
Neighborhood span44 248-46 037 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 248 nt46 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW898_RS16030GCF_002014485#BW898_RS16030
HKClassicCurrent focus
44 248-45 327 nt · Reverse (-)
BW898_RS16035GCF_002014485#BW898_RS16035
RROmpR
45 324-46 037 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014485#BW898_RS16030The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753885
Simplified PFAM architecture for HKOC_2753885
PFAM domain coverage: 178 / 359 aa (49.6%)
1 aa359 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[120-186] | HATPase_c[238-348]
- Domain count: 2
- Matched identifier: HKOC_2753885
- Positioned domains: HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_002014485#BW898_RS16030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002014485
AssemblyASM201448v1 · Contighaploid
Genome composition5 132 411 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 105 · HK 57 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key